PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G1089
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 142aa    MW: 16350 Da    PI: 9.2389
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G1089genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.92.3e-27959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 k+i+n + rqvtfskRr g++KKAeELSvLCdae a+iifs tgkl+e+++
  Gh_A01G1089  9 KKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEFALIIFSATGKLFEFAT 59
                 68***********************************************86 PP

2K-box34.11.1e-12941402571
        K-box  25 kkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 
                   ke+    ++ R++ GedL+ L++ eLqqLe+ Le++l+++ ++K +
  Gh_A01G1089  94 SKEVADKTHQMRQMRGEDLQGLNIDELQQLEKLLESGLTRVLETKVH 140
                  44444445677******************************999976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.7E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.618161IPR002100Transcription factor, MADS-box
CDDcd002652.63E-38274No hitNo description
PRINTSPR004041.6E-26323IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-30373IPR002100Transcription factor, MADS-box
PfamPF003194.5E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.65383142IPR002487Transcription factor, K-box
PfamPF014865.9E-1091141IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MAREKIKIKK IDNLTARQVT FSKRRRGLFK KAEELSVLCD AEFALIIFSA TGKLFEFATS  60
SMKDILGRYN LHSNKLDQPT LELRLENTNE ISLSKEVADK THQMRQMRGE DLQGLNIDEL  120
QQLEKLLESG LTRVLETKVH IC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_S2e-19173173Myocyte-specific enhancer factor 2B
1tqe_R2e-19173173Myocyte-specific enhancer factor 2B
1tqe_Q2e-19173173Myocyte-specific enhancer factor 2B
1tqe_P2e-19173173Myocyte-specific enhancer factor 2B
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1556490.0KC155649.1 Gossypium hirsutum MADS box protein MADS54 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012466789.15e-90PREDICTED: MADS-box protein SVP-like isoform X4
RefseqXP_012466790.14e-90PREDICTED: MADS-box protein SVP-like isoform X5
SwissprotQ9FVC11e-70SVP_ARATH; MADS-box protein SVP
TrEMBLU5L2C04e-95U5L2C0_G
STRINGVIT_18s0001g07460.t012e-72(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41902747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.16e-72MIKC_MADS family protein